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Summary of properties of promoter region AT3G55840


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT3G55840 nematode resistance protein-like protein Chr3:20729843 - 20732795 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT3G55840

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYB2 BS in RD22 20731428 20731434 ctaacca MYB
AtMYC2 BS in RD22 20730730 20730735 cacatg BHLH
AtMYC2 BS in RD22 20732178 20732183 cacatg BHLH
AtMYC2 BS in RD22 20730169 20730174 cacatg BHLH
CBF1 BS in cor15a 20729954 20729961 tggccgac ...
GBF1/2/3 BS in ADH1 20730138 20730145 ccacgtgg ...
GBF1/2/3 BS in ADH1 20730137 20730144 ccacgtgg ...
Bellringer/replumless/pennywise BS1 IN AG 20731914 20731921 aaattaaa Homeobox
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 20730674 20730679 actcat bZIP
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 20730506 20730511 actcat bZIP
W-box promoter motif 20732654 20732659 ttgact WRKY
W-box promoter motif 20732084 20732089 ttgact WRKY
W-box promoter motif 20731628 20731633 ttgact WRKY
W-box promoter motif 20731303 20731308 ttgact WRKY
ABFs binding site motif 20730139 20730146 cacgtggc bZIP
ARF1 binding site motif 20731118 20731123 tgtctc ARF
ARF1 binding site motif 20731436 20731441 tgtctc ARF
ARF1 binding site motif 20730611 20730616 tgtctc ARF
ARF1 binding site motif 20730589 20730594 tgtctc ARF
ATHB6 binding site motif 20731359 20731367 caattatta HB
CBF2 binding site motif 20730138 20730145 ccacgtgg AP2-EREBP
CBF2 binding site motif 20730137 20730144 ccacgtgg AP2-EREBP
CCA1 binding site motif 20732253 20732260 aaaaatct MYB-related
CCA1 binding site motif 20732494 20732501 aaaaatct MYB-related
DPBF1&2 binding site motif 20730593 20730599 acacaag bZIP
DPBF1&2 binding site motif 20732381 20732387 acactgg bZIP
DPBF1&2 binding site motif 20730169 20730175 acacatg bZIP
MYB binding site promoter 20730843 20730850 aaccaaac MYB
MYB binding site promoter 20730126 20730133 aaccaaac MYB
MYB binding site promoter 20729945 20729952 caccaaac MYB
MYB4 binding site motif 20730844 20730850 accaaac MYB
MYB4 binding site motif 20732170 20732176 accaaac MYB
MYB4 binding site motif 20732394 20732400 aacaaac MYB
MYB4 binding site motif 20730126 20730132 accaaac MYB
MYB4 binding site motif 20729980 20729986 aacaacc MYB
MYB4 binding site motif 20729945 20729951 accaaac MYB
RAV1-A binding site motif 20730808 20730812 caaca ABI3VP1
RAV1-A binding site motif 20731262 20731266 caaca ABI3VP1
RAV1-A binding site motif 20732644 20732648 caaca ABI3VP1
RAV1-A binding site motif 20732033 20732037 caaca ABI3VP1
RAV1-A binding site motif 20731072 20731076 caaca ABI3VP1
RAV1-A binding site motif 20730173 20730177 caaca ABI3VP1
RAV1-A binding site motif 20730020 20730024 caaca ABI3VP1
RAV1-A binding site motif 20729983 20729987 caaca ABI3VP1
RAV1-B binding site motif 20730198 20730203 cacctg ABI3VP1
RAV1-B binding site motif 20731128 20731133 cacctg ABI3VP1
LFY consensus binding site motif 20730046 20730051 ccaatg LFY
LFY consensus binding site motif 20730077 20730082 ccaatg LFY
LFY consensus binding site motif 20732382 20732387 ccagtg LFY
LFY consensus binding site motif 20732284 20732289 ccactg LFY
ABRE binding site motif 20730095 20730102 tacgtggc ...
ABRE binding site motif 20730139 20730146 cacgtggc ...
ABRE-like binding site motif 20730095 20730102 tacgtggc ...
ABRE-like binding site motif 20730139 20730146 cacgtggc ...
ABRE-like binding site motif 20731054 20731061 tacgtgta ...
ABRE-like binding site motif 20730247 20730254 tacgtgga ...
ARF binding site motif 20731118 20731123 tgtctc ...
ARF binding site motif 20731436 20731441 tgtctc ...
ARF binding site motif 20730611 20730616 tgtctc ...
ARF binding site motif 20730589 20730594 tgtctc ...
GATA promoter motif [LRE] 20730574 20730579 agataa ...
GATA promoter motif [LRE] 20730658 20730663 agataa ...
GATA promoter motif [LRE] 20731762 20731767 tgataa ...
GATA promoter motif [LRE] 20731903 20731908 agatag ...
GATA promoter motif [LRE] 20732680 20732685 agataa ...
GATA promoter motif [LRE] 20731370 20731375 agataa ...
GATA promoter motif [LRE] 20730876 20730881 agataa ...
GATA promoter motif [LRE] 20730817 20730822 tgataa ...
GATA promoter motif [LRE] 20730101 20730106 agatag ...
GATA promoter motif [LRE] 20729908 20729913 tgataa ...
GATA promoter motif [LRE] 20729878 20729883 tgataa ...
GATA promoter motif [LRE] 20729859 20729864 agataa ...
G-box promoter motif [LRE] 20730139 20730144 cacgtg ...
G-box promoter motif [LRE] 20730138 20730143 cacgtg ...
Ibox promoter motif 20730659 20730664 gataag ...
Ibox promoter motif 20731871 20731876 gataag ...
Ibox promoter motif 20732360 20732365 gataag ...
Ibox promoter motif 20729907 20729912 gataag ...
LTRE promoter motif 20731984 20731990 accgaca ...
LTRE promoter motif 20732607 20732613 accgaca ...
T-box promoter motif 20732135 20732140 actttg ...
T-box promoter motif 20732081 20732086 actttg ...
T-box promoter motif 20731300 20731305 actttg ...
SORLIP1 20731131 20731136 agccac ...
SORLIP1 20730141 20730146 agccac ...
SORLIP1 20730097 20730102 agccac ...
SORLIP2 20730031 20730035 gggcc ...

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