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Summary of properties of promoter region AT5G12330


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G12330 lateral root primordia (LRP1) Chr5:3989406 - 3991440 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G12330

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 3989632 3989637 cacatg BHLH
AtMYC2 BS in RD22 3990957 3990962 cacatg BHLH
CCA1 motif1 BS in CAB1 3991105 3991114 aaacaatcta ...
Bellringer/replumless/pennywise BS1 IN AG 3990187 3990194 aaattaaa Homeobox
Bellringer/replumless/pennywise BS1 IN AG 3991018 3991025 aaattaaa Homeobox
ARF1 binding site motif 3991087 3991092 tgtctc ARF
CCA1 binding site motif 3991106 3991113 aacaatct MYB-related
CCA1 binding site motif 3991336 3991343 aaaaatct MYB-related
CCA1 binding site motif 3991243 3991250 aacaatct MYB-related
MYB binding site promoter 3990127 3990134 aaccaaac MYB
MYB4 binding site motif 3990128 3990134 accaaac MYB
MYB4 binding site motif 3990429 3990435 aacaaac MYB
RAV1-A binding site motif 3990326 3990330 caaca ABI3VP1
RAV1-A binding site motif 3990477 3990481 caaca ABI3VP1
RAV1-A binding site motif 3991027 3991031 caaca ABI3VP1
RAV1-A binding site motif 3991196 3991200 caaca ABI3VP1
RAV1-A binding site motif 3990689 3990693 caaca ABI3VP1
RAV1-A binding site motif 3990671 3990675 caaca ABI3VP1
RAV1-A binding site motif 3990312 3990316 caaca ABI3VP1
RAV1-A binding site motif 3989678 3989682 caaca ABI3VP1
RAV1-A binding site motif 3989517 3989521 caaca ABI3VP1
LFY consensus binding site motif 3991297 3991302 ccactg LFY
ARF binding site motif 3991087 3991092 tgtctc ...
BoxII promoter motif 3990151 3990156 ggttaa ...
BoxII promoter motif 3989625 3989630 ggttaa ...
DRE-like promoter motif 3989923 3989931 ggccgacga ...
GATA promoter motif [LRE] 3990264 3990269 agatag ...
GATA promoter motif [LRE] 3990575 3990580 agatag ...
GATA promoter motif [LRE] 3990884 3990889 tgataa ...
GATA promoter motif [LRE] 3991075 3991080 tgataa ...
GATA promoter motif [LRE] 3991252 3991257 agatag ...
GATA promoter motif [LRE] 3991314 3991319 agatag ...
GATA promoter motif [LRE] 3991402 3991407 tgatag ...
GATA promoter motif [LRE] 3991050 3991055 agatag ...
GATA promoter motif [LRE] 3989857 3989862 tgataa ...
G-box promoter motif [LRE] 3989955 3989960 cacgtg ...
G-box promoter motif [LRE] 3989954 3989959 cacgtg ...
Hexamer promoter motif 3989898 3989903 ccgtcg ...
T-box promoter motif 3989846 3989851 actttg ...
T-box promoter motif 3989795 3989800 actttg ...
SORLIP1 3990843 3990848 agccac ...
SORLIP2 3989922 3989926 gggcc ...

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