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Summary of properties of promoter region AT5G20240


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G20240 PISTILLATA MADS-box protein Chr5:6826120 - 6829122 Get Sequence Predicted TAIR VIEW

Current list of binding sites and references


Binding Sites in upstream region of AT5G20240

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYB2 BS in RD22 6828406 6828412 ctaacca MYB
AtMYC2 BS in RD22 6827078 6827083 cacatg BHLH
AtMYC2 BS in RD22 6828824 6828829 cacatg BHLH
Bellringer/replumless/pennywise BS2 IN AG 6827634 6827641 aaattagt Homeobox
Bellringer/replumless/pennywise BS3 IN AG 6827633 6827640 actaattt Homeobox
W-box promoter motif 6826368 6826373 ttgacc WRKY
W-box promoter motif 6828646 6828651 ttgacc WRKY
W-box promoter motif 6827164 6827169 ttgacc WRKY
W-box promoter motif 6827094 6827099 ttgacc WRKY
ATHB2 binding site motif 6826250 6826258 taatcatta HB
CCA1 binding site motif 6828349 6828356 aaaaatct MYB-related
CCA1 binding site motif 6827881 6827888 aaaaatct MYB-related
DPBF1&2 binding site motif 6827414 6827420 acactcg bZIP
DPBF1&2 binding site motif 6827986 6827992 acacgtg bZIP
DPBF1&2 binding site motif 6828623 6828629 acacgag bZIP
DPBF1&2 binding site motif 6827986 6827992 acacgtg bZIP
MYB1 binding site motif 6828554 6828561 atccaacc MYB
MYB4 binding site motif 6826516 6826522 aacaaac MYB
MYB4 binding site motif 6828038 6828044 aacaacc MYB
MYB4 binding site motif 6828859 6828865 aacaaac MYB
MYB4 binding site motif 6828408 6828414 aactaac MYB
MYB4 binding site motif 6826216 6826222 aactacc MYB
RAV1-A binding site motif 6826413 6826417 caaca ABI3VP1
RAV1-A binding site motif 6826515 6826519 caaca ABI3VP1
RAV1-A binding site motif 6826614 6826618 caaca ABI3VP1
RAV1-A binding site motif 6827298 6827302 caaca ABI3VP1
RAV1-A binding site motif 6827794 6827798 caaca ABI3VP1
RAV1-A binding site motif 6828037 6828041 caaca ABI3VP1
RAV1-A binding site motif 6827394 6827398 caaca ABI3VP1
RAV1-A binding site motif 6826971 6826975 caaca ABI3VP1
RAV1-A binding site motif 6826892 6826896 caaca ABI3VP1
RAV1-A binding site motif 6826704 6826708 caaca ABI3VP1
RAV1-A binding site motif 6826680 6826684 caaca ABI3VP1
RAV1-B binding site motif 6827241 6827246 cacctg ABI3VP1
RAV1-B binding site motif 6827832 6827837 cacctg ABI3VP1
LFY consensus binding site motif 6827115 6827120 ccactg LFY
LFY consensus binding site motif 6827152 6827157 ccattg LFY
LFY consensus binding site motif 6827280 6827285 ccactg LFY
LFY consensus binding site motif 6829099 6829104 ccaatg LFY
LFY consensus binding site motif 6828468 6828473 ccaatg LFY
LFY consensus binding site motif 6827815 6827820 ccactg LFY
LFY consensus binding site motif 6827115 6827120 ccagtg LFY
ABRE-like binding site motif 6827987 6827994 cacgtgtc ...
ABRE-like binding site motif 6827984 6827991 cacgtgtc ...
BoxII promoter motif 6828746 6828751 ggttaa ...
BoxII promoter motif 6828763 6828768 ggttaa ...
GATA promoter motif [LRE] 6826379 6826384 tgataa ...
GATA promoter motif [LRE] 6827909 6827914 tgataa ...
GATA promoter motif [LRE] 6828075 6828080 tgataa ...
GATA promoter motif [LRE] 6828420 6828425 agatag ...
GATA promoter motif [LRE] 6828518 6828523 agatag ...
GATA promoter motif [LRE] 6829073 6829078 agatag ...
GATA promoter motif [LRE] 6828903 6828908 agataa ...
GATA promoter motif [LRE] 6828768 6828773 tgatag ...
GATA promoter motif [LRE] 6828670 6828675 agataa ...
GATA promoter motif [LRE] 6828576 6828581 tgataa ...
GATA promoter motif [LRE] 6828478 6828483 agatag ...
GATA promoter motif [LRE] 6827772 6827777 agataa ...
GATA promoter motif [LRE] 6827132 6827137 agataa ...
GATA promoter motif [LRE] 6826546 6826551 agatag ...
G-box promoter motif [LRE] 6827987 6827992 cacgtg ...
G-box promoter motif [LRE] 6827986 6827991 cacgtg ...
Hexamer promoter motif 6827142 6827147 ccgtcg ...
Ibox promoter motif 6828257 6828262 gataag ...
Ibox promoter motif 6828560 6828565 gataag ...
LTRE promoter motif 6826886 6826892 accgaca ...
T-box promoter motif 6826150 6826155 actttg ...
T-box promoter motif 6829029 6829034 actttg ...
T-box promoter motif 6828528 6828533 actttg ...
T-box promoter motif 6828370 6828375 actttg ...
T-box promoter motif 6828309 6828314 actttg ...
SORLREP2 6828490 6828498 ataaaacgt ...
SORLIP1 6827075 6827080 agccac ...

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