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Summary of properties of promoter region AT5G23880


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G23880 cleavage and polyadenylation specificity factor Chr5:8049549 - 8052506 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G23880

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 8050398 8050403 cacatg BHLH
AtMYC2 BS in RD22 8050520 8050525 cacatg BHLH
AtMYC2 BS in RD22 8051750 8051755 cacatg BHLH
AtMYC2 BS in RD22 8051751 8051756 cacatg BHLH
AtMYC2 BS in RD22 8050422 8050427 cacatg BHLH
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 8050356 8050361 actcat bZIP
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 8052252 8052257 actcat bZIP
W-box promoter motif 8052249 8052254 ttgact WRKY
W-box promoter motif 8050199 8050204 ttgacc WRKY
ARF1 binding site motif 8050442 8050447 tgtctc ARF
ARF1 binding site motif 8049848 8049853 tgtctc ARF
ATHB2 binding site motif 8051169 8051177 taataatta HB
DPBF1&2 binding site motif 8050810 8050816 acacgag bZIP
DPBF1&2 binding site motif 8051749 8051755 acacatg bZIP
DPBF1&2 binding site motif 8052055 8052061 acactag bZIP
DPBF1&2 binding site motif 8051885 8051891 acacaag bZIP
DPBF1&2 binding site motif 8051768 8051774 acacgtg bZIP
DPBF1&2 binding site motif 8050422 8050428 acacatg bZIP
DPBF1&2 binding site motif 8049884 8049890 acactgg bZIP
MYB3 binding site motif 8051261 8051268 taactaac MYB
MYB4 binding site motif 8051215 8051221 acctaac MYB
MYB4 binding site motif 8051299 8051305 accaaac MYB
MYB4 binding site motif 8051270 8051276 aacaacc MYB
MYB4 binding site motif 8051261 8051267 aactaac MYB
RAV1-A binding site motif 8051468 8051472 caaca ABI3VP1
RAV1-A binding site motif 8051562 8051566 caaca ABI3VP1
RAV1-A binding site motif 8051684 8051688 caaca ABI3VP1
RAV1-A binding site motif 8051720 8051724 caaca ABI3VP1
RAV1-A binding site motif 8052299 8052303 caaca ABI3VP1
RAV1-A binding site motif 8052336 8052340 caaca ABI3VP1
RAV1-A binding site motif 8052155 8052159 caaca ABI3VP1
RAV1-A binding site motif 8051865 8051869 caaca ABI3VP1
RAV1-A binding site motif 8051406 8051410 caaca ABI3VP1
RAV1-A binding site motif 8051365 8051369 caaca ABI3VP1
RAV1-A binding site motif 8050574 8050578 caaca ABI3VP1
RAV1-A binding site motif 8050309 8050313 caaca ABI3VP1
RAV1-A binding site motif 8050076 8050080 caaca ABI3VP1
RAV1-A binding site motif 8049683 8049687 caaca ABI3VP1
LFY consensus binding site motif 8049885 8049890 ccagtg LFY
LFY consensus binding site motif 8050663 8050668 ccattg LFY
LFY consensus binding site motif 8051697 8051702 ccattg LFY
LFY consensus binding site motif 8050022 8050027 ccattg LFY
ABRE-like binding site motif 8049940 8049947 tacgtgtc ...
ACE promoter motif 8049941 8049950 gacacgtaga ...
ARF binding site motif 8050442 8050447 tgtctc ...
ARF binding site motif 8049848 8049853 tgtctc ...
BoxII promoter motif 8049699 8049704 ggttaa ...
BoxII promoter motif 8052341 8052346 ggttaa ...
EveningElement promoter motif 8050970 8050978 aaaatatct ...
GATA promoter motif [LRE] 8050145 8050150 agataa ...
GATA promoter motif [LRE] 8050246 8050251 tgatag ...
GATA promoter motif [LRE] 8050856 8050861 agataa ...
GATA promoter motif [LRE] 8051257 8051262 tgatag ...
GATA promoter motif [LRE] 8051737 8051742 tgataa ...
GATA promoter motif [LRE] 8051906 8051911 tgataa ...
GATA promoter motif [LRE] 8052009 8052014 tgataa ...
GATA promoter motif [LRE] 8051935 8051940 tgataa ...
GATA promoter motif [LRE] 8051450 8051455 tgataa ...
GATA promoter motif [LRE] 8051384 8051389 tgatag ...
GATA promoter motif [LRE] 8051087 8051092 agatag ...
GATA promoter motif [LRE] 8050798 8050803 tgataa ...
GATA promoter motif [LRE] 8050335 8050340 tgataa ...
GATA promoter motif [LRE] 8049784 8049789 tgataa ...
GATA promoter motif [LRE] 8049768 8049773 tgataa ...
G-box promoter motif [LRE] 8051769 8051774 cacgtg ...
G-box promoter motif [LRE] 8051768 8051773 cacgtg ...
GCC-box promoter motif 8049903 8049908 gccgcc ...
Ibox promoter motif 8050857 8050862 gataag ...
Ibox promoter motif 8051738 8051743 gataag ...
Ibox promoter motif 8051907 8051912 gataag ...
Ibox promoter motif 8052008 8052013 gataag ...
Ibox promoter motif 8051934 8051939 gataag ...
Ibox promoter motif 8051449 8051454 gataag ...
Ibox promoter motif 8050797 8050802 gataag ...
Ibox promoter motif 8050334 8050339 gataag ...
L1-box promoter motif 8050709 8050716 taaatgta ...
L1-box promoter motif 8051175 8051182 taaatgta ...
T-box promoter motif 8052222 8052227 actttg ...
SORLIP1 8050763 8050768 agccac ...
SORLIP1 8052490 8052495 agccac ...

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