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Summary of properties of promoter region AT5G40340


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G40340 PWWP domain protein Chr5:16151907 - 16154908 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G40340

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 16153112 16153117 cacatg BHLH
AtMYC2 BS in RD22 16153537 16153542 cacatg BHLH
AtMYC2 BS in RD22 16154253 16154258 cacatg BHLH
AtMYC2 BS in RD22 16153144 16153149 cacatg BHLH
AtMYC2 BS in RD22 16151936 16151941 cacatg BHLH
Bellringer/replumless/pennywise BS1 IN AG 16152088 16152095 aaattaaa Homeobox
Bellringer/replumless/pennywise BS1 IN AG 16152152 16152159 aaattaaa Homeobox
Bellringer/replumless/pennywise BS1 IN AG 16153563 16153570 aaattaaa Homeobox
Bellringer/replumless/pennywise BS1 IN AG 16154442 16154449 aaattaaa Homeobox
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 16154504 16154509 actcat bZIP
W-box promoter motif 16153011 16153016 ttgacc WRKY
W-box promoter motif 16153630 16153635 ttgacc WRKY
W-box promoter motif 16153582 16153587 ttgacc WRKY
DPBF1&2 binding site motif 16152465 16152471 acacttg bZIP
DPBF1&2 binding site motif 16152543 16152549 acacaag bZIP
DPBF1&2 binding site motif 16153296 16153302 acacaag bZIP
DPBF1&2 binding site motif 16154297 16154303 acacgtg bZIP
DPBF1&2 binding site motif 16154297 16154303 acacgtg bZIP
DPBF1&2 binding site motif 16154087 16154093 acaccag bZIP
MYB binding site promoter 16154837 16154844 aacctaac MYB
MYB4 binding site motif 16152414 16152420 accaaac MYB
MYB4 binding site motif 16154837 16154843 acctaac MYB
RAV1-A binding site motif 16151934 16151938 caaca ABI3VP1
RAV1-A binding site motif 16152035 16152039 caaca ABI3VP1
RAV1-A binding site motif 16152049 16152053 caaca ABI3VP1
RAV1-A binding site motif 16153488 16153492 caaca ABI3VP1
RAV1-A binding site motif 16154065 16154069 caaca ABI3VP1
RAV1-A binding site motif 16154816 16154820 caaca ABI3VP1
RAV1-A binding site motif 16154695 16154699 caaca ABI3VP1
RAV1-A binding site motif 16154091 16154095 caaca ABI3VP1
RAV1-A binding site motif 16153465 16153469 caaca ABI3VP1
RAV1-A binding site motif 16153076 16153080 caaca ABI3VP1
RAV1-A binding site motif 16152526 16152530 caaca ABI3VP1
RAV1-A binding site motif 16152162 16152166 caaca ABI3VP1
LFY consensus binding site motif 16152764 16152769 ccaatg LFY
LFY consensus binding site motif 16152120 16152125 ccaatg LFY
ABRE binding site motif 16154327 16154334 tacgtggc ...
ABRE-like binding site motif 16154327 16154334 tacgtggc ...
ABRE-like binding site motif 16154295 16154302 cacgtgta ...
BoxII promoter motif 16152182 16152187 ggttaa ...
BoxII promoter motif 16152268 16152273 ggttaa ...
BoxII promoter motif 16154779 16154784 ggttaa ...
DRE-like promoter motif 16152326 16152334 gaccgacaa ...
GATA promoter motif [LRE] 16152564 16152569 tgatag ...
GATA promoter motif [LRE] 16152570 16152575 tgatag ...
GATA promoter motif [LRE] 16152747 16152752 agatag ...
GATA promoter motif [LRE] 16152840 16152845 tgataa ...
GATA promoter motif [LRE] 16153165 16153170 agataa ...
GATA promoter motif [LRE] 16154413 16154418 tgatag ...
GATA promoter motif [LRE] 16154482 16154487 agataa ...
GATA promoter motif [LRE] 16154303 16154308 agataa ...
GATA promoter motif [LRE] 16153709 16153714 agataa ...
GATA promoter motif [LRE] 16152775 16152780 tgatag ...
GATA promoter motif [LRE] 16151975 16151980 tgatag ...
G-box promoter motif [LRE] 16154298 16154303 cacgtg ...
G-box promoter motif [LRE] 16154297 16154302 cacgtg ...
Hexamer promoter motif 16153431 16153436 ccgtcg ...
Ibox promoter motif 16154483 16154488 gataag ...
LTRE promoter motif 16152327 16152333 accgaca ...
SORLREP3 16152494 16152502 tgtatatat ...
SORLIP2 16153264 16153268 gggcc ...
SORLIP2 16154112 16154116 gggcc ...
SORLIP2 16154138 16154142 gggcc ...
SORLIP5 16152371 16152377 gagtgag ...

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