AGRIS logo
Home AtcisDB AtTFDB Regulatory
Network
People Downloads External Resources Publications

Summary of properties of promoter region AT5G42540


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G42540 5-3 exoribonuclease 2 Chr5:17022564 - 17024660 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G42540

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 17023474 17023479 cacatg BHLH
AtMYC2 BS in RD22 17023489 17023494 cacatg BHLH
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 17022601 17022606 actcat bZIP
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 17022771 17022776 actcat bZIP
CCA1 binding site motif 17024499 17024506 aaaaatct MYB-related
DPBF1&2 binding site motif 17023473 17023479 acacatg bZIP
DPBF1&2 binding site motif 17023488 17023494 acacatg bZIP
DPBF1&2 binding site motif 17024592 17024598 acacttg bZIP
DPBF1&2 binding site motif 17023554 17023560 acacacg bZIP
MYB binding site promoter 17022837 17022844 aaccaaac MYB
MYB3 binding site motif 17023866 17023873 taactaac MYB
MYB4 binding site motif 17023867 17023873 aactaac MYB
MYB4 binding site motif 17024106 17024112 aacaacc MYB
MYB4 binding site motif 17022837 17022843 accaaac MYB
RAV1-A binding site motif 17023165 17023169 caaca ABI3VP1
RAV1-A binding site motif 17024562 17024566 caaca ABI3VP1
RAV1-A binding site motif 17022659 17022663 caaca ABI3VP1
LFY consensus binding site motif 17023926 17023931 ccaatg LFY
LFY consensus binding site motif 17022863 17022868 ccaatg LFY
BoxII promoter motif 17024539 17024544 ggttaa ...
BoxII promoter motif 17024182 17024187 ggttaa ...
BoxII promoter motif 17024054 17024059 ggttaa ...
BoxII promoter motif 17023921 17023926 ggttaa ...
GATA promoter motif [LRE] 17023656 17023661 tgataa ...
GATA promoter motif [LRE] 17023964 17023969 agataa ...
GATA promoter motif [LRE] 17024029 17024034 tgataa ...
GATA promoter motif [LRE] 17022885 17022890 agataa ...
GATA promoter motif [LRE] 17022589 17022594 tgataa ...
Ibox promoter motif 17022588 17022593 gataag ...
L1-box promoter motif 17024472 17024479 taaatgta ...
RY-repeat promoter motif 17022830 17022837 catgcatg ...
RY-repeat promoter motif 17022829 17022836 catgcatg ...
T-box promoter motif 17024624 17024629 actttg ...

Copyright © 2012. All rights reserved. Credits