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Summary of properties of promoter region AT5G46860


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G46860 syntaxin SYP22 (VAM3) Chr5:19031192 - 19032628 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G46860

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 19031470 19031475 cacatg BHLH
Bellringer/replumless/pennywise BS1 IN AG 19032517 19032524 aaattaaa Homeobox
W-box promoter motif 19031926 19031931 ttgacc WRKY
ARF1 binding site motif 19031291 19031296 tgtctc ARF
CCA1 binding site motif 19031197 19031204 aaaaatct MYB-related
DPBF1&2 binding site motif 19031442 19031448 acacgtg bZIP
MYB binding site promoter 19032334 19032341 aaccaaac MYB
MYB binding site promoter 19032504 19032511 aaccaaac MYB
MYB4 binding site motif 19032335 19032341 accaaac MYB
MYB4 binding site motif 19032420 19032426 aactaac MYB
MYB4 binding site motif 19032474 19032480 aacaaac MYB
MYB4 binding site motif 19032505 19032511 accaaac MYB
MYB4 binding site motif 19031831 19031837 aacaaac MYB
RAV1-A binding site motif 19031940 19031944 caaca ABI3VP1
RAV1-A binding site motif 19031923 19031927 caaca ABI3VP1
RAV1-A binding site motif 19031801 19031805 caaca ABI3VP1
LFY consensus binding site motif 19031497 19031502 ccaatg LFY
ABRE-like binding site motif 19031256 19031263 tacgtgta ...
ABRE-like binding site motif 19031443 19031450 cacgtgtc ...
ABRE-like binding site motif 19031440 19031447 cacgtgga ...
ARF binding site motif 19031291 19031296 tgtctc ...
BoxII promoter motif 19032155 19032160 ggttaa ...
GATA promoter motif [LRE] 19031524 19031529 tgataa ...
GATA promoter motif [LRE] 19031912 19031917 tgataa ...
GATA promoter motif [LRE] 19031934 19031939 tgataa ...
GATA promoter motif [LRE] 19032595 19032600 agataa ...
GATA promoter motif [LRE] 19031430 19031435 agatag ...
GATA promoter motif [LRE] 19031420 19031425 tgataa ...
G-box promoter motif [LRE] 19031443 19031448 cacgtg ...
G-box promoter motif [LRE] 19031442 19031447 cacgtg ...
Hexamer promoter motif 19031265 19031270 ccgtcg ...
T-box promoter motif 19031995 19032000 actttg ...

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