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Summary of properties of promoter region AT5G48870


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G48870 U6 snRNA-associated Sm-like protein-like Chr5:19827574 - 19830576 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G48870

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
AtMYC2 BS in RD22 19828691 19828696 cacatg BHLH
AtMYC2 BS in RD22 19829259 19829264 cacatg BHLH
AtMYC2 BS in RD22 19829370 19829375 cacatg BHLH
AtMYC2 BS in RD22 19829089 19829094 cacatg BHLH
AtMYC2 BS in RD22 19828692 19828697 cacatg BHLH
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 19828539 19828544 actcat bZIP
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 19829573 19829578 actcat bZIP
ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH 19828525 19828530 actcat bZIP
W-box promoter motif 19828920 19828925 ttgact WRKY
W-box promoter motif 19829990 19829995 ttgacc WRKY
W-box promoter motif 19830274 19830279 ttgacc WRKY
W-box promoter motif 19830473 19830478 ttgact WRKY
W-box promoter motif 19828384 19828389 ttgact WRKY
W-box promoter motif 19827932 19827937 ttgact WRKY
ARF1 binding site motif 19827971 19827976 tgtctc ARF
DPBF1&2 binding site motif 19830113 19830119 acacggg bZIP
DPBF1&2 binding site motif 19829089 19829095 acacatg bZIP
MYB3 binding site motif 19828033 19828040 taactaac MYB
MYB4 binding site motif 19828034 19828040 aactaac MYB
RAV1-A binding site motif 19828380 19828384 caaca ABI3VP1
RAV1-A binding site motif 19828388 19828392 caaca ABI3VP1
RAV1-A binding site motif 19829141 19829145 caaca ABI3VP1
RAV1-A binding site motif 19829875 19829879 caaca ABI3VP1
RAV1-A binding site motif 19829093 19829097 caaca ABI3VP1
RAV1-A binding site motif 19828333 19828337 caaca ABI3VP1
LFY consensus binding site motif 19828058 19828063 ccattg LFY
LFY consensus binding site motif 19828340 19828345 ccattg LFY
LFY consensus binding site motif 19829994 19829999 ccattg LFY
LFY consensus binding site motif 19830321 19830326 ccaatg LFY
LFY consensus binding site motif 19829994 19829999 ccaatg LFY
LFY consensus binding site motif 19828764 19828769 ccagtg LFY
ARF binding site motif 19827971 19827976 tgtctc ...
BoxII promoter motif 19828300 19828305 ggttaa ...
DRE-like promoter motif 19828282 19828290 aaccgacat ...
GATA promoter motif [LRE] 19827837 19827842 tgataa ...
GATA promoter motif [LRE] 19828434 19828439 agataa ...
GATA promoter motif [LRE] 19829067 19829072 tgataa ...
GATA promoter motif [LRE] 19830134 19830139 tgataa ...
GATA promoter motif [LRE] 19830493 19830498 agatag ...
GATA promoter motif [LRE] 19828308 19828313 agataa ...
GATA promoter motif [LRE] 19828215 19828220 agatag ...
GATA promoter motif [LRE] 19827996 19828001 tgataa ...
GATA promoter motif [LRE] 19827602 19827607 agataa ...
GCC-box promoter motif 19830001 19830006 gccgcc ...
Ibox promoter motif 19829068 19829073 gataag ...
LTRE promoter motif 19828283 19828289 accgaca ...
RY-repeat promoter motif 19828521 19828528 catgcatg ...
RY-repeat promoter motif 19828520 19828527 catgcatg ...
SORLIP2 19829999 19830003 gggcc ...
SORLIP2 19830117 19830121 gggcc ...
SORLIP2 19828494 19828498 gggcc ...

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