AGRIS logo
Home AtcisDB AtTFDB Regulatory
Network
People Downloads External Resources Publications

Summary of properties of promoter region AT5G60100


Promoter ID Gene Description Chromosome Location Promoter Sequence Promoter Type Promoter Source Regulatory Network
AT5G60100 pseudo-response regulator - like Chr5:24217727 - 24219079 Get Sequence Predicted TAIR ...

Current list of binding sites and references


Binding Sites in upstream region of AT5G60100

ColorKey for Binding Sites

Documented binding sites in a specific promoter Bindingsites in a specific TF or TF family and bindingsite motifs predicted in promoters
BS Name BS Genome Start BS Genome End Binding Site Sequence Binding Site Family/TF
CCA1 binding site motif 24218354 24218361 aaaaatct MYB-related
CCA1 binding site motif 24218721 24218728 aacaatct MYB-related
DPBF1&2 binding site motif 24218952 24218958 acacttg bZIP
DPBF1&2 binding site motif 24218835 24218841 acaccag bZIP
MYB binding site promoter 24218019 24218026 aaccaacc MYB
MYB4 binding site motif 24218020 24218026 accaacc MYB
MYB4 binding site motif 24218640 24218646 aacaaac MYB
MYB4 binding site motif 24218107 24218113 aactaac MYB
RAV1-A binding site motif 24218711 24218715 caaca ABI3VP1
RAV1-A binding site motif 24218865 24218869 caaca ABI3VP1
RAV1-A binding site motif 24218272 24218276 caaca ABI3VP1
RAV1-A binding site motif 24217970 24217974 caaca ABI3VP1
TGA1 binding site motif 24218117 24218124 tgacgtgg bZIP
TGA1 binding site motif 24218053 24218060 tgacgtgg bZIP
LFY consensus binding site motif 24218677 24218682 ccattg LFY
LFY consensus binding site motif 24218677 24218682 ccaatg LFY
LFY consensus binding site motif 24218432 24218437 ccattg LFY
ABRE-like binding site motif 24218116 24218123 gacgtggc ...
ABRE-like binding site motif 24218098 24218105 tacgtgtc ...
ABRE-like binding site motif 24218052 24218059 gacgtgga ...
GATA promoter motif [LRE] 24217924 24217929 agataa ...
GATA promoter motif [LRE] 24218667 24218672 tgataa ...
GATA promoter motif [LRE] 24218689 24218694 tgatag ...
GATA promoter motif [LRE] 24219021 24219026 agatag ...
GATA promoter motif [LRE] 24218207 24218212 tgatag ...
GATA promoter motif [LRE] 24218082 24218087 agataa ...
GATA promoter motif [LRE] 24217936 24217941 agatag ...
GATA promoter motif [LRE] 24217902 24217907 agatag ...
T-box promoter motif 24218636 24218641 actttg ...

Copyright © 2012. All rights reserved. Credits