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BHLH Family
Description
Reference
ClustAlW Alignment
Hidden Markov Model
Nucleotide Sequences
Protein Sequences
(M)IPS <> (S)ALK <> T(A)IR
(C)onfirmed direct targets (U)nconfirmed direct targets
There are currently 161 members identified for this family
TF Locus Id
Protein Name
Sub Family
Gene Name , Synonym
Links
Sequences
BindingSites/NFM
Direct Targets
Total Direct Interactions
At5g41315
AtbHLH1
GL3, MYC6.2
M
,
S
,
A
Nucl
-
Prot
C
(25)
-
U
(693)
VIEW (719)
At2g31220
AtbHLH10
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g41240
AtbHLH100
BHLH100
M
,
S
,
A
Nucl
-
Prot
VIEW (6)
At5g04150
AtbHLH101
BHLH101
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At1g69010
AtbHLH102
BIM2
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At4g21340
AtbHLH103
B70
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At4g14410
AtbHLH104
M
,
S
,
A
Nucl
-
Prot
C
(2)
-
U
(7)
VIEW (11)
At5g54680
AtbHLH105
ILR3
M
,
S
,
A
Nucl
-
Prot
C
(23)
-
U
(23)
VIEW (46)
At2g41130
AtbHLH106
M
,
S
,
A
Nucl
-
Prot
At3g56770
AtbHLH107
M
,
S
,
A
Nucl
-
Prot
At1g25310
AtbHLH108
MEE8
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g68240
AtbHLH109
M
,
S
,
A
Nucl
-
Prot
At4g36060
AtbHLH11
M
,
S
,
A
Nucl
-
Prot
At1g27660
AtbHLH110
M
,
S
,
A
Nucl
-
Prot
At1g31050
AtbHLH111
M
,
S
,
A
Nucl
-
Prot
At1g61660
AtbHLH112
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g19500
AtbHLH113
M
,
S
,
A
Nucl
-
Prot
At4g05170
AtbHLH114
M
,
S
,
A
Nucl
-
Prot
At1g51070
AtbHLH115
M
,
S
,
A
Nucl
-
Prot
At3g26744
AtbHLH116
ATICE1, ICE1, SCRM
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (2)
At3g22100
AtbHLH117
M
,
S
,
A
Nucl
-
Prot
At4g25400
AtbHLH118
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g28811
AtbHLH119
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g00480
AtbHLH12
ATMYC1, myc1
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g51790
AtbHLH120
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At3g19860
AtbHLH121
M
,
S
,
A
Nucl
-
Prot
C
(2)
-
U
(1)
VIEW (5)
At1g51140
AtbHLH122
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (4)
At3g20640
AtbHLH123
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g46970
AtbHLH124
PIL1
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At1g62975
AtbHLH125
M
,
S
,
A
Nucl
-
Prot
At4g25410
AtbHLH126
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g28815
AtbHLH127
M
,
S
,
A
Nucl
-
Prot
At1g05805
AtbHLH128
M
,
S
,
A
Nucl
-
Prot
C
(1)
-
U
(1)
VIEW (5)
At2g43140
AtbHLH129
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At1g01260
AtbHLH13
MYC7E
M
,
S
,
A
Nucl
-
Prot
C
(3)
-
U
(3)
VIEW (10)
At2g42280
AtbHLH130
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At4g38071
AtbHLH131
M
,
S
,
A
Nucl
-
Prot
At3g62090
AtbHLH132
PIF6, PIL2
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At2g20095
AtbHLH133
M
,
S
,
A
Nucl
-
Prot
At5g15160
AtbHLH134
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At1g74500
AtbHLH135
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g39860
AtbHLH136
PRE1
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At5g50915
AtbHLH137
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At2g31215
AtbHLH138
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g43175
AtbHLH139
M
,
S
,
A
Nucl
-
Prot
At4g00870
AtbHLH14
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At5g38860
AtbHLH141
BIM3
M
,
S
,
A
Nucl
-
Prot
At5g64340
AtbHLH142
SAC51
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (4)
At5g09460
AtbHLH143
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (5)
At1g29950
AtbHLH144
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (2)
At5g50010
AtbHLH145
M
,
S
,
A
Nucl
-
Prot
At4g30180
AtbHLH146
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g17100
AtbHLH147
M
,
S
,
A
Nucl
-
Prot
C
(1)
-
U
(1)
VIEW (5)
At3g06590
AtbHLH148
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g09250
AtbHLH149
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At2g20180
AtbHLH15
PIF1, PIL5
M
,
S
,
A
Nucl
-
Prot
C
(191)
-
U
(560)
VIEW (753)
At3g05800
AtbHLH150
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g47270
AtbHLH151
M
,
S
,
A
Nucl
-
Prot
C
(3)
-
U
(163)
VIEW (168)
At1g22380
AtbHLH152
AtUGT85A3
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g05710
AtbHLH153
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At2g31730
AtbHLH154
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g31280
AtbHLH155
CPUORF7
M
,
S
,
A
Nucl
-
Prot
At2g27230
AtbHLH156
LHW
M
,
S
,
A
Nucl
-
Prot
At1g64625
AtbHLH157
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g43060
AtbHLH158
M
,
S
,
A
Nucl
-
Prot
VIEW (7)
At4g30410
AtbHLH159
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At4g00050
AtbHLH16
UNE10
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At1g71200
AtbHLH160
M
,
S
,
A
Nucl
-
Prot
At3g47710
AtbHLH161
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At4g20970
AtbHLH162
M
,
S
,
A
Nucl
-
Prot
At2g46510
AtbHLH17
ATAIB
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At2g22750
AtbHLH18
M
,
S
,
A
Nucl
-
Prot
At2g22760
AtbHLH19
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g63650
AtbHLH2
ATMYC-2, EGL1, EGL3
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (1)
At2g22770
AtbHLH20
NAI1
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g16910
AtbHLH21
AMS
M
,
S
,
A
Nucl
-
Prot
At4g21330
AtbHLH22
DYT1
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g28790
AtbHLH23
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g36930
AtbHLH24
SPT
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g37850
AtbHLH25
FIT1
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g02340
AtbHLH26
FBI1, HFR1, REP1, RSF1
M
,
S
,
A
Nucl
-
Prot
VIEW (8)
At4g29930
AtbHLH27
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At5g46830
AtbHLH28
M
,
S
,
A
Nucl
-
Prot
At2g28160
AtbHLH29
ATBHLH029, ATBHLH29, BHLH029, FIT1, FRU
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g16430
AtbHLH3
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g68810
AtbHLH30
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (1)
At1g59640
AtbHLH31
BPE, BPEP, BPEUB, ZCW32
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At3g25710
AtbHLH32
BHLH32
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g12860
AtbHLH33
ICE2, SCRM2
M
,
S
,
A
Nucl
-
Prot
At3g23210
AtbHLH34
M
,
S
,
A
Nucl
-
Prot
C
(3)
-
U
(8)
VIEW (13)
At5g57150
AtbHLH35
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At5g51780
AtbHLH36
M
,
S
,
A
Nucl
-
Prot
At3g50330
AtbHLH37
HEC2
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g56970
AtbHLH38
BHLH038, ORG2
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At3g56980
AtbHLH39
BHLH039, ORG3
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (5)
At4g17880
AtbHLH4
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g00120
AtbHLH40
EDA33, GT140, IND, IND1
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g56960
AtbHLH41
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At4g09820
AtbHLH42
TT8
M
,
S
,
A
Nucl
-
Prot
C
(1)
VIEW (1)
At5g09750
AtbHLH43
HEC3
M
,
S
,
A
Nucl
-
Prot
At1g18400
AtbHLH44
BEE1
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At3g06120
AtbHLH45
MUTE
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g08130
AtbHLH46
BIM1
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At3g47640
AtbHLH47
M
,
S
,
A
Nucl
-
Prot
C
(3)
-
U
(66)
VIEW (72)
At2g42300
AtbHLH48
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At1g68920
AtbHLH49
M
,
S
,
A
Nucl
-
Prot
C
(1)
-
U
(1)
VIEW (2)
At5g46760
AtbHLH5
ATR2
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At1g73830
AtbHLH50
BEE3
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At2g40200
AtbHLH51
M
,
S
,
A
Nucl
-
Prot
At1g30670
AtbHLH52
M
,
S
,
A
Nucl
-
Prot
At2g34820
AtbHLH53
M
,
S
,
A
Nucl
-
Prot
At1g27740
AtbHLH54
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At1g12540
AtbHLH55
M
,
S
,
A
Nucl
-
Prot
At4g28800
AtbHLH56
M
,
S
,
A
Nucl
-
Prot
At4g01460
AtbHLH57
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At4g36540
AtbHLH58
BEE2
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (3)
At4g02590
AtbHLH59
UNE12
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g32640
AtbHLH6
ATMYC2, JAI1, JIN1, MYC2, RAP-1, RD22BP1, ZBF1
M
,
S
,
A
Nucl
-
Prot
bindingsites
C
(3)
-
U
(3)
VIEW (8)
At3g57800
AtbHLH60
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At5g10570
AtbHLH61
M
,
S
,
A
Nucl
-
Prot
At3g07340
AtbHLH62
M
,
S
,
A
Nucl
-
Prot
C
(1)
-
U
(1)
VIEW (5)
At4g34530
AtbHLH63
CIB1
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At2g18300
AtbHLH64
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g59060
AtbHLH65
PIF5, PIL6
M
,
S
,
A
Nucl
-
Prot
C
(2)
VIEW (6)
At2g24260
AtbHLH66
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g61950
AtbHLH67
M
,
S
,
A
Nucl
-
Prot
C
(1)
VIEW (2)
At4g29100
AtbHLH68
M
,
S
,
A
Nucl
-
Prot
At4g30980
AtbHLH69
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g03040
AtbHLH7
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g46810
AtbHLH70
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At5g46690
AtbHLH71
bHLH071
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At5g61270
AtbHLH72
PIF7
M
,
S
,
A
Nucl
-
Prot
VIEW (4)
At5g67110
AtbHLH73
ALC
M
,
S
,
A
Nucl
-
Prot
C
(1)
VIEW (3)
At1g10120
AtbHLH74
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g25330
AtbHLH75
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At1g26260
AtbHLH76
CIB5
M
,
S
,
A
Nucl
-
Prot
At3g23690
AtbHLH77
M
,
S
,
A
Nucl
-
Prot
C
(2)
-
U
(2)
VIEW (5)
At5g48560
AtbHLH78
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g62610
AtbHLH79
M
,
S
,
A
Nucl
-
Prot
C
(3)
-
U
(3)
VIEW (6)
At1g09530
AtbHLH8
PAP3, PIF3, POC1
M
,
S
,
A
Nucl
-
Prot
C
(12)
-
U
(631)
VIEW (645)
At1g35460
AtbHLH80
M
,
S
,
A
Nucl
-
Prot
U
(1)
VIEW (2)
At4g09180
AtbHLH81
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At5g58010
AtbHLH82
M
,
S
,
A
Nucl
-
Prot
At1g66470
AtbHLH83
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At2g14760
AtbHLH84
M
,
S
,
A
Nucl
-
Prot
At4g33880
AtbHLH85
M
,
S
,
A
Nucl
-
Prot
At5g37800
AtbHLH86
M
,
S
,
A
Nucl
-
Prot
At3g21330
AtbHLH87
M
,
S
,
A
Nucl
-
Prot
VIEW (3)
At5g67060
AtbHLH88
HEC1
M
,
S
,
A
Nucl
-
Prot
VIEW (6)
At1g06170
AtbHLH89
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At2g43010
AtbHLH9
PIF4, SRL2
M
,
S
,
A
Nucl
-
Prot
C
(4)
-
U
(1639)
VIEW (1646)
At1g10610
AtbHLH90
M
,
S
,
A
Nucl
-
Prot
At2g31210
AtbHLH91
M
,
S
,
A
Nucl
-
Prot
At5g43650
AtbHLH92
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g65640
AtbHLH93
bHLH093
M
,
S
,
A
Nucl
-
Prot
At1g22490
AtbHLH94
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At4g49770
AtbHLH95
M
,
S
,
A
Nucl
-
Prot
At1g72210
AtbHLH96
M
,
S
,
A
Nucl
-
Prot
VIEW (2)
At3g24140
AtbHLH97
FMA
M
,
S
,
A
Nucl
-
Prot
At5g53210
AtbHLH98
SPCH
M
,
S
,
A
Nucl
-
Prot
VIEW (1)
At5g65320
AtbHLH99
M
,
S
,
A
Nucl
-
Prot
Comments & Suggestions
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